1HPV: CRYSTAL STRUCTURE OF HIV-1 PROTEASE IN COMPLEX WITH VX-478, A POTENT AND ORALLY BIOAVAILABLE INHIBITOR OF THE ENZYME
"Dimer of Gag-Pol polyprotein [489-587,L499I,L508Q,K509R,E524D,M525I,S526N,M535I,I539V,I543V,I551V,L552P,A560V,V571A,L579M]"( 85% identity ) with "BDBM577"( exact match ):

A Quick Jmol Tutorial

To bring up the menu: Right-click on Jmol window

Rotate molecule: Hold LeftMouse and drag

Translate molecule: Hold Ctrl-RightMouse and drag. (May not work on Macbook)

Center the view on a selected atom

  • Menu→Set Picking→Center
  • Left-click on desired central atom
  • Menu→Set Picking→Off

Change from Cartoon rendering of protein to "licorice bond" rendering

  • Menu→Select→Protein→All
  • Menu→Style→Bonds→0.2 Å
  • Menu→Style→Structures→Off

Change from "licorice bond" rendering of ligand to van der Waals rendering

  • Menu→Select→Hetero→Ligand
  • Menu→Style→Atoms→100% van der Waals

Save image of current view

  • Menu→Save→PNG image

To learn more about Jmol, see http://www.jmol.org, http://wiki.jmol.org.